Laboratory of Genomics of Supra-organizational Systems

Head of the laboratory: Anton A. Nizhnikov

Phone: +7 (812) 476 16 02

The laboratory was created to conduct scientific research within the framework of the project "Mobilization of the genetic resources of microorganisms on the basis of the Russian Collection of Agricultural Microorganisms (RCAM) at the All-Russia Research Institute for Agricultural Microbiology (ARRIAM) according to the network principle of organization", implemented in accordance with the terms of Agreement No. 075-15-2021-1055 of 28.09.2021 on the provision of a grant in the form of a subsidy from the federal budget to scientific organizations and educational organizations of higher education for the implementation of certain activities of the Federal Scientific-technical program for the development of genetic technologies for 2019 – 2027.

The research purpose of the Laboratory is studying the biological diversity of economically valuable microorganisms using methods of molecular genetics and genomics.

THE MAIN AREAS OF RESEARCH 

- Search, isolation, and cultivation of strains of economically valuable microorganisms

- Genome-wide sequencing of economically valuable microorganisms

- Depositing of selected strains in the Network Bioresource Collection in the field of genetic technologies for agriculture of the FSBSI ARRIAM

- Functional annotation of genomic loci determining beneficial properties of microorganisms

• Поиск, изоляция и культивирование штаммов хозяйственного ценных микроорганизмов

• Депонирование отобранных штаммов в Сетевую биоресурсную коллекцию в области генетических технологий для сельского хозяйства ФГБНУ ВНИИСХМ

• Полногеномное секвенирование хозяйственно-ценных микроорганизмов

• Функциональная аннотация геномных локусов, определяющих полезные свойства микроорганизмов

Staff

• 

  ANTON A. NIZHNIKOV

  Doctor of Biological Sciences, Professor of the Russian Academy of Sciences, Head of Laboratory No. 7, Professor of St. Petersburg State University

  •  
  •  
• 

  KIRILL S. ANTONETS

  Leading research fellow of Laboratory No. 7, Candidate of Biological Sciences

  •  
  •  
• 

  MIKHAIL V. BELOUSOV

  Senior research fellow, Candidate of Biological Sciences

  •  
  •  
• 

  HAIDAR FAYUD

  Junior research fellow, graduate student at SPbSU

  •  
  •  
• 

  MARIA N. ROMANENKO

  Junior research fellow, graduate student at SPbSU

  •  
  •  
• 

  ANTON E. SHIKOV

  Junior research fellow, graduate student at SPbSU

  •  
  •  

PUBLICATIONS

1. Shikov AE, Belousova ME, Belousov MV, Nizhnikov AA, Antonets KS. Salmonella-Based Biorodenticides: Past Applications and Current Contradictions. Int J Mol Sci. 2022 Nov 23;23(23):14595. doi: 10.3390/ijms232314595.
2. Kosolapova AO, Belousov MV, Sulatsky MI, Tsyganova AV, Sulatskaya AI, Bobylev AG, Shtark OY, Tsyganov VE, Volkov KV, Zhukov VA, Tikhonovich IA, Nizhnikov AA. RopB protein of Rhizobium leguminosarum bv. viciae adopts amyloid state during symbiotic interactions with pea (Pisum sativum L.). Front Plant Sci. 2022 Oct 24;13:1014699. doi: 10.3389/fpls.2022.1014699.

3. Merkushova A.V., Shikov A.E., Nizhnikov A.A., Antonets K.S. For Someone, You Are the Whole World: Host-Specificity of Salmonella enterica // Int. J. Mol. Sci., 2023, V.24, e13670. https://doi.org/10.3390/ijms241813670 (Impact Factor 5.6, Q1)

4. Shikov A.E., Merkushova A.V., Savina I.A., Nizhnikov A.A., Antonets K.S. The man, the plant, and the insect: shooting host specificity determinants in Serratia marcescens pangenome // Frontiers in Microbiology, 2023, V.14, e1211999. https://doi.org/10.3389/fmicb.2023.1211999

5. Romanenko M.N., Nesterenko M.A., Shikov A.E., Nizhnikov A.A., Antonets K.S. Draft Genome Sequence Data of Lysinibacillus sphaericus Strain 1795 with Insecticidal Properties // Data, 2023, V.8, 167. https://doi.org/10.3390/data8110167

CURRENT GRANTS

1. Проект «Мобилизация генетических ресурсов микроорганизмов на базе Ведомственной коллекции полезных микроорганизмов сельскохозяйственного назначения (ВКСМ) при ФГБНУ ВНИИСХМ с использованием сетевого принципа организации», реализуемый в соответствии с условиями Соглашения № 075-15-2021-1055 от 28.09.2021 г. о предоставлении гранта в форме субсидии из федерального бюджета научным организациям и образовательным организациям высшего образования на реализацию отдельных мероприятий Федеральной научно-технической программы развития генетических технологий на 2019 – 2027 годы.

Документы

• Приказ о создании лаборатории Смотреть Скачать (1.213 Мб)

Смотреть все