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Laboratory of Genetics and Breeding of microorganisms №6

Laboratory of Genetics and Breeding of microorganisms №6

Head of the laboratory : Marina L. Rumyantseva

Phone: +7 (812) 476 28 02

The Laboratory of Genetics and Selection of Microorganisms stands at the origins of the scientific direction associated with the study of the molecular genetic foundations of the formation of plant-microbial symbiosis. The founder of the laboratory is Dr. B.N. Prof. Simarov B.V., under whose leadership 18 PhD theses were defended. The laboratory has accumulated extensive experience working with nodule bacteria that form a nitrogen-fixing symbiosis with such economically significant crops as alfalfa, sweet clover, fenugreek, goat, vetch and other legume species. The analysis of the genes of alfalfa and goatgrass plants involved in the formation of stress-resistant symbiotic systems is carried out. In addition, studies of bacteriophages of nodule bacteria are being conducted. Classical microbiology methods are used, as well as modern methods of genetic and genomic analysis (high-performance sequencing of the 2nd and 3rd generation), annotation and bioinformatic analysis of bacterial and phage genomes are carried out.

The laboratory has created a unique collection of natural isolates of nodule bacteria of alfalfa (Sinorhizobium meliloti, S. medicae) isolated from the genetic centers of origin of cultivated plants (the area of the Great Ridge in the Caucasus, the Aral Sea region, southern regions of Tajikistan, Uzbekistan, Kyrgyzstan), the area exposed to man-made effects (VURS), as well as collections of natural isolates of nodule bacteria of goat Neorhizobium galegae bv. orientalis, Neorhizobium galegae bv. officinalis isolated from the genetic centers of origin of cultivated plants (the area of the Great Ridge in the Caucasus).

More than 25 new S. meliloti genes have been identified and studied, mutations in which lead to highly effective and stress-resistant strains promising for the production of biological products.

More than 16 highly effective inoculant strains for alfalfa, sweet clover and goatgrass were deposited in the Departmental Collection of Useful Microorganisms for Agricultural Purposes of the OSKHN RAS (VKSM), three patents for inoculant strains and a patent for a plant-microbial system based on alfalfa changeable were obtained.

 

The laboratory staff actively cooperates with leading universities in England (York, Newcastle), Spain (Madrid), Germany (Magdeburg, Bielefeld), Italy (Florence), Finland (Helsinki), China (Beijing).

Staff

Oksana Nikolaevna Kurchak – PhD, Senior Researcher

Smirnova Tatyana Anatolyevna – research engineer

Cherkasova Maria Evgenievna – research engineer

Elizaveta Vladimirovna Pernak – postgraduate student

GRANTS/ CONTRACTS

  • RFBR: 11-04-01899-a, 09-04-00907-a, 09-04-00386-a, 11-04-10068-k, 10-04-01169-a, 12-04-01768-a, 12-04-00409a, 12-04-01371-a, 14-04-01441a, 15-04-09295a; RFBR-AFGIR 09-04-92513-IK_a/RUB1-2942-ST- 09 (bilateral grant from Russia-USA), RFBR 17-04-02011, RFBR 18-04-01278
  • RNF 17-16-01095
  • Cooperation grant from the Ministry of Science of Finland No. 1132544
  • State Contract No. 16.M04.11.0013 on the EurAsEC interstate target program "Innovative Biotechnologies" for 2011-2015.
  • State Contract of the Ministry of Education and Science of the Russian Federation (Agreement No. 14.607.21.0178, RFMEFI60717X0178).
  • RF 24-16-00260 , RNF 20-16-00105
  • NCMU "Agrotechnologies of the Future" (agreements with the Ministry of Education and Science of the Russian Federation No. 075-15-2020-920 dated 11/16/2020 and No. 075-15-2022-320 dated 04/20/2022)

List of publications for the period 2019-2023

 

  1. Kozlova, A.P.; Saksaganskaia, A.S.; Afonin, A.M.; Muntyan, V.S.; Vladimirova, M.E.; Dzyubenko, E.A.; Roumiantseva, M.L. A Temperate Sinorhizobium Phage, AP-16-3, Closely Related to Phage 16-3: Mosaic Genome and Prophage Analysis. Viruses 2023, 15, 1701. https://doi.org/10.3390/v15081701
  2. Vladimirova M.E., Pernak E.V., Muntyan V.S., Saksaganskaia A.S., Kozlova A.P., Afonin A.M., Yurkov A.P., Zhukov V.A., Roumiantseva M.L. Chloroplast Genome of Medicago lupulina L. var. vulgaris Koch: Structure, Sequences Introduced as a Result of HGT and Viral Nature // Russian Journal of Plant Physiology. 2023. V. 70. Iss. 8. Article 193. https://doi.org/10.1134/S1021443723602331
  3. Muntyan V.S., Vladimirova M.E., Afonin A.M., Muntyan A.N., Roumiantseva M.L. Analysis of salt-sensitive and salt-tolerant Sinorhizobium meliloti strains using DNA microarray, phenotype microarray and genome mining techniques // Proceedings of 23rd International Multidisciplinary Scientific GeoConference SGEM 2023. 2023. V. 23. Iss. 6.1. P. 129-136. https://doi.org/10.5593/sgem2023/6.1/s25.15
  4. Pernak E.V., Vladimirova M.E., Muntyan V.S., Afonin A.M., Roumiantseva M.L. Analysis of CRISPR cassette elements in native isolates of Sinorhizobium meliloti isolated in the Central Asian origin of plant diversity // Proceedings of 23rd International Multidisciplinary Scientific GeoConference SGEM 2023. 2023. V. 23. Iss. 6.1. P. 113-120. https://doi.org/10.5593/sgem2023/6.1/s25.13
  5. Kamova A., Stepanova T., Orlova A., Stepanova G., Rumyantseva M. Methods of increasing the productivity of various varieties and hybrids of variegated alfalfa in the conditions of arable farming biologization BIO Web Conf., 66 (2023) 11001 https://doi.org/10.1051/bioconf/20236611001
  6. Chebotar V.K., Patchkin A.N., Balakina S.V., Gadzhiev N.M., Lebedeva V.A., Khutti A.V., Chizhevskaya E.P., Filippova P.S., Keleynikova O.V., Baganova M.E., Pishik V.N. Potato productivity and susceptibility to rhizoctoniosis and late blight under the influence of endophytic bacteria Bacillus thuringiensis W65 and Bacillus amyloliquefaciens P20 // Agricultural Biology. 2023. Vol. 58. No. 3. pp. 429-446. https://doi.org/10.15389/agrobiology.2023.3.429rusChebotar, V.K.; Chizhevskaya, E.P.; Andronov, E.E.; Vorobyov, N.I.; Keleinikova, O.V.; Baganova, M.E.; Konovalov, S.N.; Filippova, P.S.; Pishchik, V.N. Assessment of the Rhizosphere Bacterial Community under Maize Growth Using Various Agricultural Technologies with Biomodified Mineral Fertilizers. Agronomy 2023, 13, 1855. https://doi.org/10.3390/agronomy13071855
  7. Chebotar, V. K., Gancheva, M. S., Chizhevskaya, E. P., Keleinikova, O. V., Baganova, M. E., Zaplatkin, A. N., & Husainov, K. A. (2023). Whole-genome sequence of Paenibacillus amylolyticus strain W018, isolated from Triticum aestivum L. seeds, obtained using nanopore sequencing. Microbiology resource announcements, 12(10), e0068723. https://doi.org/10.1128/MRA.00687-23
  8. Zverev, A. O., Kurchak, O. N., Orlova, O. V., Onishchuk, O. P., Kichko, A. A., Eregin, A. V., Naliukhin, A. N., Pinaev, A. G., & Andronov, E. E. (2023). Dynamic of the Soil Microbiota in Short-Term Crop Rotation. Life (Basel, Switzerland), 13(2), 400. https://doi.org/10.3390/life13020400
  9. Onishchuk O.P., Kurchak O.N., Kimeklis A.K., Aksenova T.S., Andronov E.E., Provorov N.A. Biodiversity of symbioses formed by nodule bacteria Rhizobium leguminosarum with leguminous plants of the haloid complex // Agricultural Biology. 2023. Vol. 58. No. 1. pp. 87-99. https://doi.org/10.15389/agrobiology.2023.1.87rusRoumiantseva M.L., Vladimirova M.E., Saksaganskaia A.S., Muntyan V.S., Kozlova A.P., Afonin A.M., Baturina O.A., Simarov B.V. Ensifer meliloti L6-AK89, an Effective Inoculant of Medicago lupulina Varieties: Phenotypic and Deep-Genome Screening // Agronomy. 2022. V. 12. Iss. 4. 766. https://doi.org/10.3390/agronomy12040766
  10. Muntyan V.S., Roumiantseva M.L. Molecular Phylogenetic Analysis of Salt-Tolerance-Related Genes in Root-Nodule Bacteria Species Sinorhizobium meliloti // Agronomy. 2022. V. 12. Iss. 8. 1968. https://doi.org/10.3390/agronomy12081968
  11. Vladimirova M.E., Muntyan V.S., Afonin A.M., Muntyan A.N., Baturina O.A.,Dzuybenko E.A., Saksaganskaya A.S., Simarov B.V., Roumiantseva M.L., Kabilov M.R.Complete Genome of Sinorhizobium meliloti AK76, a Symbiont of Wild Diploid Medicago lupulina from the Mugodgary Mountain Region // Microbiology Resource Announcements. 2022. V. 11. Iss. 3. e0108821. https://doi.org/10.1128/mra.01088-21
  12. Saksaganskaia A.S., Muntyan V.S., Muntyan A.N., Simarov B.V., Roumiantseva M.L. Abundance of phage-related sequences on non-symbiotic plasmids of Sinorhizobium meliloti from centers of legume plants diversity // 22nd International Multidisciplinary Scientific GeoConference SGEM 2022. 2022. V. 22. Iss. 6.1. P. 49-56. https://doi.org/10.5593/sgem2022/6.1/s25.06
  13. Muntyan V.S., Saksaganskaia A.S., Muntyan A.N., Vladimirova M.E., Roumiantseva M.L. Stress and immunity of nodule bacteria Sinorhizobium meliloti: localization, polymorphism and phylogeny of genetic determinants // 22nd International Multidisciplinary Scientific GeoConference SGEM 2022. 2022. V. 22. Iss. 6.1. P. 121-128. https://doi.org/10.5593/sgem2022/6.1/s25.15
  14. Kozlova A.P., Dzheger G.S., Bolotnikova O.I., Rumyantseva M.L. Studying the relationship between rhizobiophages and bacteria Sinorhizobium meliloti in order to improve biological products // "Biotechnology and safety in the technosphere": proceedings of the II National Scientific Conference of Students and Young Scientists, March 2-3, 2022 At 2 p.m. 1. From 18-20.
  15. Chebotar V.K., Chizhevskaya E.P., Vorobyov N.I., Bobkova V.V., Pomyaksheva L.V., Khomyakov Y.V., Konovalov S.N. The Quality and Productivity of Strawberry (Fragaria × ananassa Duch.) Improved by the Inoculation of PGPR Bacillus velezensis BS89 in Field Experiments // Agronomy. 2022. V. 12. Iss. 11. 2600. https://doi.org/10.3390/agronomy12112600
  16. Mirskaya G.V., Khomyakov Y.V., Rushina N.A., Vertebny V.E., Chizhevskaya E.P., Chebotar V.K., Chesnokov Y.V., Pishchik V.N. Plant Development of Early-Maturing Spring Wheat (Triticum aestivum L.) under Inoculation with Bacillus sp. V2026 // Plants (Basel). 2022. V. 11. Iss. 14. 1817. https://doi.org/10.3390/plants11141817
  17. Chebotar V.K., Gancheva M.S., Chizhevskaya E.P., Keleinikova O.V., Baganova M.E., Zaplatkin A.N., Pishchik V.N. Draft Genome Sequence of Bacillus vallismortis Strain BL01, Isolated from Artemisia lerchiana Web. Roots // Microbiology Resource Announcements. 2022. V. 11. Iss. 11. e0064722. https://doi.org/10.1128/mra.00647-22
  18. Chebotar V.K., Gancheva M.S., Voshol G.P., Malfanova N.V., Karasev E.S., Chizhevskaya E.P., Zaplatkin A.N., Khiutti A.V., Lazarev A.M., Gadjiev N.M., Lebedeva V.A., Balakina S.V. Draft Genome Sequence of the Tomato Stem Endophyte Bacillus safensis TS3 // Microbiology Resource Announcements. 2022. V. 11. Iss. 11. e0081622. https://doi.org/10.1128/mra.00816-22
  19. Chebotar V.K., Chizhevskaya E.P., Baganova M.E., Keleinikova O.V., Yuzikhin O.S., Zaplatkin A.N., Khonina O.V., Kostitsin R.D., Lapenko N.G. Endophytes from Halotolerant Plants Aimed to Overcome Salinity and Draught // Plants. 2022. V. 11. Iss. 21. 2992. https://doi.org/10.3390/plants11212992
  20. Sviridova O.V., Vorobyov N.I., Andronov E.E., Kurchak O.N., Chizhevskaya E.P., Pukhalskiy Ya.V., Pishchik V.N., Loskutov S.I., Sitnov V.Yu. Optimum ratio of complex biological product and fertilize (NPK) and the contribution of fungi and bacteria to the general decomposition and mulching of coniferous wood waste // Agronomy Research. 2022. V. 20. No. 4. P. 827–841. https://doi.org/10.15159/ar.22.059
  21. Muntyan V.S., Afonin A.M., Vladimirova M.E., Saksaganskaya A.S., Gribchenko E.S., Baturina O., Roumiantseva M.L. Complete genome sequence of Sinorhizobium meliloti S35m, a salt-tolerant isolate from alfalfa rhizosphere in soil native to the Caucasus region // Microbiology Resource Announcements. 2021. V. 10. Iss. 11. e01417-20. https://doi.org/10.1128/MRA.01417-20
  22. Saksaganskaia A.S., Muntyan V.S., Muntyan A.N., Simarov B.V., Roumiantseva M.L. Allelic polymorphism of symbiotically essential genes of Sinorhizobium meliloti native to legume plants origin at the Caucasus // 21th International Multidisciplinary Scientific GeoConference SGEM 2021. 2021. V. 21. Iss. 6.1. P. 55-62. https://doi.org/10.5593/sgem2021/6.1/s25.08
  23. Saksaganskaia A.S., Vladimirova M.E., Muntyan V.S., Roumiantseva M.L. Sinorhizobium meliloti harboured distinct alleles of nod genes showed different symbiotic activity on Medicago lupulina and Medicago varia // 21th International Multidisciplinary Scientific GeoConference SGEM 2021. 2021. V. 21. Iss. 6.1. P. 257-262. https://doi.org/10.5593/sgem2021/6.1/s25.33
  24. Onishchuk O., Kurchak O., Chizhevskaya E., Simarov B., Provorov N. Supply of acetyl-CoA to N2-fixing bacteroids: Insights from the mutational and proteomic analyses of Sinorhizobium meliloti // Biological Communications. 2021. V. 66. Iss. 2. P. 124-128. https://doi.org/10.21638/spbu03.2021.203
  25. Pishchik V., Mirskaya G., Chizhevskaya E., Chebotar V., Chakrabarty D. Nickel stress-tolerance in plant-bacterial associations // PeerJ. 2021. V.9. e12230. https://doi.org/10.7717/peerj.12230
  26. Chebotar V.K., Voshol G.P., Malfanova N.V., Chizhevskaya E.P., Zaplatkin A.N., Komarova O.V., Baganova M.E., Lazarev A.M., Balakina S.V. Draft genome sequence of plant growth-promoting Bacillus velezensis BS89 // Microbiol Resour Announc. 2021. V. 10. Iss. 1. e01294-20. https://doi.org/10.1128/MRA.01294-20
  27. Chebotar V.K., Zaplatkin A.N., Komarova O.V., Baganova M.E., Chizhevskaya E.P., Polukhin N.I., Balakina S.V. Endophytic bacteria for development of microbiological preparations for increasing productivity and protection of new potato varieties // Research on Crops. 2021. V. 22. Special Issue. P. 104-107. https://doi.org/10.31830/2348-7542.2021.025
  28. Zavalin A., Chebotar V., Alferov, A., Chernova, L., Shcherbakova, E., & Chizhevskaya, E. Nitrogen use by plants and nitrogen flows after application of standard and biomodified nitrogen fertilizers on barley // Biological Communications. 2021. V. 66. Iss. 4. P. 283–289. https://doi.org/10.21638/spbu03.2021.401
  29. Vladimirova M.E., Muntyan V.S., Kozlova A.P., Grudinin M.P., Roumiantseva M.L. CRISPR/Cas in genomes of Sinorhizobium meliloti // 20th International Multidisciplinary Scientific GeoConference SGEM 2020. 2020. V. 20. Iss. 6.1. P. 215-222. https://doi.org/10.5593/sgem2020/6.1/s25.028
  30. Kozlova A.P., Muntyan V.S., Vladimirova M.E., Grudinin M.P., Roumiantseva M.L. Comparative genomics of the sinorhizobial PhiLM21-like intact prophages on complete chromosomes // 20th International Multidisciplinary Scientific GeoConference SGEM 2020. 2020. V. 20. Iss. 6.1. P. 207-214. https://doi.org/10.5593/sgem2020/6.1/s25.027
  31. Saksaganskaia A.S., Vladimirova M.E., Afonin A.M., Simarov B.V., Roumiantseva M.L. Cryptic plasmids essential for Sinorhizobium meliloti fitness // 20th International Multidisciplinary Scientific GeoConference SGEM 2020. 2020. V. 20. Iss. 6.1. P. 223-230. https://doi.org/10.5593/sgem2020/6.1/s25.029
  32. Muntyan V.S., Antonova E.V., Muntyan A.N., Simarov B.V., Roumiantseva M.L. Phylogenetic analysis of vertically and horizontally acquired genes responsible for salt tolerance of nitrogen-fixing alpha-proteobacteria // 20th International Multidisciplinary Scientific GeoConference SGEM 2020. 2020. V. 20. Iss. 6.1. P. 287-294. https://doi.org/10.5593/sgem2020/6.1/s25.038
  33. Vladimirova M.E., Afonin A.M., Muntyan V.S., Simarov B.V., Roumiantseva M.L. "Evaluation of Sinorhizobium meliloti Genomic Islands Inserted into the tRNA-Thr," 2020 Cognitive Sciences, Genomics and Bioinformatics (CSGB), Novosibirsk, Russia, 2020, pp. 118-121, https://doi.org/10.1109/CSGB51356.2020.9214720
  34. Muntyan V.S., Kozlova A.P., Afonin A.M., Muntyan A.N., Dzyubenko E.A., Kabilov M.R., Antonova E.V., Roumiantseva M.L. "Comparative Genomic Analysis of Moderate Bacteriophages of Alfalfa Root Nodule Bacteria," 2020 Cognitive Sciences, Genomics and Bioinformatics (CSGB), Novosibirsk, Russia, 2020, pp. 72-75, https://doi.org/10.1109/CSGB51356.2020.9214723
  35. Tsyganov V.E., Tsyganova A.V., Gorshkov A.P., Seliverstova E.V., Kim V.E., Chizhevskaya E.P., Belimov A.A., Serova T.A., Ivanova K.A., Kulaeva O.A., Kusakin P.G., Kitaeva A.B., and Tikhonovich I.A. Efficacy of a Plant-Microbe System: Pisum sativum (L.) Cadmium-Tolerant Mutant and Rhizobium leguminosarum Strains, Expressing Pea Metallothionein Genes PsMT1 and PsMT2, for Cadmium Phytoremediation // Frontiers in Microbiology. 2020. V. 11. Article 15. https://doi.org/10.3389/fmicb.2020.00015
  36. Аксенова Т.С., Чирак Е.Р., Онищук О.П., Курчак О.Н., Афонин А.М., Пинаев А.Г., Андронов Е.Е., Проворов Н.А. Выявление анцестральных характеристик генома у Rhizobium leguminosarum bv. trifolii. Сельскохозяйственная биология. 2020. Т. 55. № 3. С. 489-498. https://doi.org/10.15389/agrobiology.2020.3.489rus [Aksenova T.S., Chirak E.R., Onishchuk O.P., Kurchak O.N., Afonin A.M., Pinaev A.G., Andronov E.E., Provorov N.A. Identification of the ancestral characteristics in the genome of Rhizobium leguminosarum bv. trifolii. Sel’skokhozyaistvennaya biologiya [Agricultural Biology]. 2020. V. 55. № 3, P. 489-498. https://doi.org/10.15389/agrobiology.2020.3.489eng]
  37. Muntyan V.S., Baturina O.A., Afonin A.M., Cherkasova M.E., Laktionov Y.V., Saksaganskaya A.S., Kabilov M.R., Roumiantseva M.L. // Draft genome sequence of Sinorhizobium meliloti AK555 // Microbiol Resour Announc. 2019. V. 8. Iss. 2. e01567-18. https://doi.org/10.1128/MRA.01567-18
  38. Baturina O.A., Muntyan V.S., Afonin A.M., Cherkasova M.E., Simarov B.V., Kabilov M.R., Roumiantseva M.L. // Draft genome sequence of Sinorhizobium meliloti strain CXM1-105 // Microbiol Resour Announc. 2019. V. 8. Iss. 2. e01621-18. https://doi.org/10.1128/MRA.01621-18
  39. Baturina O.A., Muntyan V.S., Cherkasova M.E., Saksaganskaya A.S., Dzuybenko N.I., Kabilov M.R., Roumiantseva M.L. // Draft genome sequence of Sinorhizobium meliloti strain AK170 // Microbiol Resour Announc. 2019. V. 8. Iss. 1. e01571-18. https://doi.org/10.1128/MRA.01571-18
  40. Cherkasova M.E., Muntyan V.S., Saksaganskaya A.S., Simarov B.V., Romantseva M.L. Sinorhizobium meliloti: microscopic types and genetic features // Biological Mathematics. 2019. Vol. 17. No. 3. pp. 23-38. https://doi.org/10.17816/ecogen17323-38 Cherkasova M.E., Muntyan V.S., Saksaganskaya A.S., Simarov B.V., Rumyan-sheva M.L. // Sinorhizobium meliloti: biome types and genetic changes // Ecol. gen. 2019. T . 17. Iss. 3. Pp.23-38. https://doi.org/10.17816/ecogen17323-38 ] Muntyan V. S.; Olekhnovich R. O.; Vakkerov-Kouzova N. D.; Prokhorov V. A.; Kozlova A. P. Bacteriophages of Sinorhizobium meliloti growing on alfalfa "The origin of diversity in the Caucasus" // 19th International Interdisciplinary Scientific Geoconference SGEM 2019. Vol. 6.1. pp. 567-574. https://doi.org/10.5593/sgem2019/6.1/S25.073
  41. Karasev E.S., Andronov E.E., Aksenova T.S., Chizhevskaya E.P., Tupikin A.E., Provorov N.A. Habitat of the giant goat (Neo rhizobium galegae): anal polymorism of the nitrogen gene pool and the development of clubs // Genetics. 2019. Pp. 55. No. 2. pp. 234-238. https://doi.org/10.1134/S0016675819020085 [Karasev E.S., Andronov E.E., Aksenova T.S., Chizhevskaya E.P., Provorov N.A., Tupikin A.E. Evolution of rhizobia of the common goat (Neorhizobium galegae): analysis of polymorphism of nitrogen fixation and nodule formation genes // Russian Scientific Journal. Genetics. 2019. Vol. 55. No. 2. pp. 263-266. https://doi.org/10.1134/S1022795419020078 ].
  42. Rumyantseva M.L. Nodule bacteria: prospects for monitoring symbiotic properties and stress resistance using genetic markers (review) // Agricultural Biology. 2019. Vol. 54. No.5. pp. 847-862. https://doi.org/10.15389/agrobiology.2019.5.847rus [Rumyantseva M.L. Nodule bacteria: prospects for monitoring symbiotic properties using genetic markers (review) // Agricultural Biology, 2019, Vol. II. 54, No. 5, pp. 847-862. https://doi.org/10.15389/agrobiology.2019.5.847eng ]
  43. Rumyantseva M.L., Vladimirova M.E., Muntyan V.S., Stepanova G.V., Saksaganskaya A.S., Kozhemyakov A.P., Orlova A.G., Becker A., Simarov B.V. Highly concentrated preparations of nodule bacteria (Medicago varia L.): molecular genetic characteristics and use in accompanying breeding // Agricultural Biology. – 2019. Vol. 54. No. 6. – pp. 1306-1323. https://doi.org/10.15389/agrobiology.2019.6.1306rus [Rumyantseva M.L., Vladimirova M.E., Muntyan V.S., Stepanova G.V., Saksaganskaya A.S., Kozhemyakov A.P., Orlova A.G., Becker A., Simarov B.V. Highly effective inoculants for the control of alfalfa root nodules (Medicago varia L.): molecular genetic analysis and practical application in the creation of varieties // Agricultural Biology, 2019, Vol. II. 54, No. 6, pp. 1306-1323. https://doi.org/10.15389/agrobiology.2019.6.1306eng ]

PARTICIPATION IN CONFERENCES:

 

IV All-Russian Scientific and Practical Conference with international participation "DEVELOPMENT OF PHYSICO-CHEMICAL BIOLOGY, BIOTECHNOLOGY AND BIOINFORMATICS AT THE PRESENT STAGE", October 25-27, 2023, Irkutsk:

  • Gorbunova M.K., Kozlova A.P., Rumyantseva M.L. Transductants of the jumbo phage S. meliloti 

III All-Russian Scientific and Practical Conference for students, postgraduates and young scientists "Polytechnic for Life Sciences", October 24-27, 2023, St. Petersburg:

  • Gorbunova M.K., Kozlova A.P., Rumyantseva M.L. Rhizobiophages of nodule bacteria Sinorhizobium meliloti of the Northwestern region of the Russian Federation
  • Aprelkova A.P., Muntyan V.S., Rumyantseva M.L. Spectrum of species-specific antiviral systems in the genomes of highly effective strains of Sinorhizobium meliloti

 

4th Russian Microbiological Congress, September 24-29, 2023, Tomsk:

  • Kozlova A.P., Muntyan V.S., Rumyantseva M.L. Biological and genomic characteristics of the jumbo phage Sinorhizobium meliloti

 

X Congress of the Society of Plant Physiologists of Russia (OFR) "Plant Biology in the era of global climate change", September 18-23, 2023, Ufa:

  • Saksaganskaya A.S., Muntyan V.S., Rumyantseva M.L. Analysis of the region of symbiotic genes on pSymA Sinorhizobium meliloti – symbionts of economically valuable legumes

 

II All-Russian School-conference "Conservation and multiplication of genetic resources of microorganisms", June 26-27, 2023, St. Petersburg:

  • Vladimirova M.E., Muntyan V.S., Rumyantseva M.L. Analysis of site-specific integration of phage DNA, using the example of strains of Sinorhizobium meliloti, from the center of itragressive hybridization of alfalfa
  • Muntyan V.S., Rumyantseva M.L. Genetic analysis of Sinorhizobium meliloti strains with contrasting salt resistance
  • Pernak E.V., Kozlova A.P., Saksaganskaya A.S., Vladimirova M.E., Muntyan V.S., Rumyantseva M.L. Analysis of CRISPR-Cas systems in natural isolates of Sinorhizobium meliloti isolated in the Central Asian genocenter of cultivated plants
  • Chebotar V.K., Chizhevskaya E.P., Keleynikova O.V., Baganova M.E., Patkin A.N., Kostitsyn R.D., Honina O.V., Lapenko N.G. Endophytes of halophytic plants as candidates for the creation of anti-stress microbiological preparations

 

XI International Scientific and Practical Conference "Protection of plants from harmful organisms", June 19-23, 2023, Krasnodar:

  • Chebotar V.K., Chizhevskaya E.P., Keleynikova O.V., Baganova M.E., Patkin A.N., Yerofeeva A.V., Kostitsyn R.D., Honina O.V., Lapenko N.G. Endophytic bacteria of halophytic plants as a promising resource for the creation of multifunctional microbiological preparations for crop production in arid and saline soils

 

III International Conference "Plants and Microorganisms: Biotechnology of the Future" (PLAMIC2022), October 3-8, 2022, St. Petersburg:

  • Vladimirova M.E., Rumyantseva M.L. Site-specific integration of phage sequences in the chromosome of Sinorhizobium meliloti
  • Kozlova A.P., Muntyan V.S., Vladimirova M.E., Rumyantseva M.L. Analysis of primary bacteriophages of Sinorhizobium meliloti [Kozlova A.P., Muntyan V.S., Vladimirova M.E., Rumyantseva M.L. Analysis of soil bacteriophages of Sinorhizobium meliloti]
  • Muntyan V.S., Muntyan A.N., Rumantseva M.L. Molecular genetic analysis of the genome of the primary republic of nodule bacteria of the species Sinorhizobium meliloti for salt analysis [Muntyan V.S., Muntyan A.N., Rumyantseva M.L. Molecular phylogenetic analysis of the genes of Sinorhizobium meliloti responsible for adaptation to primary salt stress]
  • Saksaganskaya A.S., V. Muntyan.S., M. Rumyantseva.L. Intraspecific diversity and phylogeny of the nodule node of alfalfa bacteria from the primary genocenter of legumes [Saksaganskaia A. S., Muntyan V. S., Roumiantseva M. L. intraspecific diversity and phylogeny of the nodule node of alfalfa bacteria from legumes, the main one at the center of genetics]
  • To Chebotar.K., Gancheva M.S., Chizhevskaya E.P., V. Pishik.N., Patchkin A.N., O. Keleynikova.V., Baganova M.E. Endophytic bacteria are a promising resource for the creation of new microbiological preparations for the protection and nutrition of plants [Chebotar V. K., Gancheva M. S., Chizhevskaya E. P., Pishik V. N., Zaplatkin A. N., Keleynikova O. V., Baganova M. E. endophytic bacteria are a promising resource for the development of new microbiological preparations plant protection and nutrition]

 

VI All-Russian School-conference with international participation for young scientists "Molecular genetic and cellular aspects of plant-microbial interactions", October 5, 2022, St. Petersburg:

  • Kozlova A.P., Muntyan V.S., Vladimirova M.E., Rumyantseva M.L. Analysis of soil bacteriophages of Sinorhizobium meliloti [Kozlova A.P., Muntyan V.S., Vladimirova M.E., Rumyantseva M.L. Analysis of soil bacteriophages of Sinorhizobium meliloti] 
IUMS Congress (IUMS2022, онлайн), 20-22 July 2022:
  • Kozlova A.P., Muntyan V.S., Vladimirova M.E., Saksaganskaya A.S., Roumiantseva M.L. Phages of root nodule bacteria native to Primary Gene Center of Cultivated Plants at the Caucus

 

The Biochemistry Global Summit (25th IUBMB Congress, the 46th FEBS Congress and the 15th PABMB Congress), 9-14 July 2022, Lisbon, Portugal:
  • Kozlova A., Vladimirova M., Muntyan V., Pernak E., Roumiantseva M. Sequences related to Rhizobium phage 16-3 in genomes of geographically distant Sinorhizobium meliloti strains, root nodule symbionts of alfalfa

 

13th International Multiconference on "Bioinformatics of Genome Regulation and Structure/Systems Biology" – BGRS/SB-2022, 04-08 of July 2022, Novosibirsk, Russia (13th / International Multi-Conference "Bioinformatics of Genomic Regulation and Structural/Systems Biology" – BGRS/SB-2022, July 4-8, 2022, Novosibirsk, Russia):

  • Kozlova A.P., Muntyan V.S., Vladimirov M.E., Rumyantseva M.L. Search and analysis of profages related to page AP-16-3 in the genomes of Sinorhizobium spp. 

The first All-Russian school-conference "Conservation and multiplication of genetic resources of microorganisms", June 22-23, 2022, St. Petersburg:

  • Kozlova A.P., Muntyan V.S., Vladimirova M.E., Rumyantseva M.L. Bacteriophages of nodule bacteria from the Central Asian Genocenter of cultivated plants
  • Saksaganskaya A.S., Muntyan V.S., Muntyan A.N., Simarov B.V., Rumyantseva M.L. Occurrence of sequences of phage origin on non-symbiotic plasmids of Sinorhizobium meliloti
  • Gancheva M.S., Chizhevskaya E.P., Pishik V.N., Aleynikova O.V., Bogdanova M.E., Patkin A.N., Chebotar V.K. Genome assembly of the endophytic bacterium Bacillus vallismortis strain BL01

 

III All-Russian Conference "High-performance sequencing in genomics", June 19-24, 2022, Novosibirsk:

  • Kozlova A.P., Muntyan V.S., Rumyantseva M.L. Jumbo phage Sinorhizobium meliloti

 

V All-Russian School-conference with international participation for young scientists "Molecular genetic and cellular aspects of plant-microbial interactions", October 6-8, 2021, St. Petersburg:

  • Vladimirova M.E., Rumyantseva M.L. Localization analysis of the replication termination region in Sinorhizobium meliloti
  • Saksaganskaya A.S., Vladimirova M.E., Muntyan V.S., Rumyantseva M.L. Symbiotrophic indicators of plant-microbial systems based on economically valuable alfalfa species and strains of Sinorhizobium meliloti containing different alleles of virulence genes
  • Kozlova A.P., Muntyan V.S., Vladimirova M.E. Search and analysis of sequences similar to Rhizobium phage 16-3 in the genomes of Sinorhizobium meliloti
  • Kimeklis A.K., Safronova V.I., Belimov A.A., Onishchuk O.P., Kurchak O.N., Aksenova T.S., Pinaev A.G., Andronov E.E., Provorov N.A. Genetic features of bacteria Rhizobium leguminosarum bv. viciae – symbionts of relict legume Vavilovia fromosa

 

The 14th European Nitrogen Fixation Conference (ENFC 2021), 22nd September – 22nd October 2021, Aarhus University, Denmark:

  • Muntyan V., Roumiantseva M. Molecular phylogenetic approach to analyze evolutionary pathways of salt tolerance-related genes in root-nodulated Sinorhizobium meliloti
  • Vladimirova M., Roumiantseva M. Phage related sequences a site specifically integrated into isoacceptor tRNA genes of Sinorhizobium meliloti

 

45th FEBS Congress (virtual), 3-8 July 2021, Ljubljana, Slovenia:

  • Vladimirova M., Muntyan V., Afonin A., Saksaganskaya A., Antonova E., Simarov B., Roumiantseva M. Prophages and phage related sequences in chromosomes of Sinorhizobium meliloti isolates native to Aral Sea region
  • Saksaganskaia A., Muntyan V., Muntyan A., Afonin A., Simarov B., Roumiantseva M. Are cryptic plasmids of Sinorhizobium meliloti attractive within phage infection?
  • Kozlova A., Muntyan V., Muntyan A., Afonin A., Dzyubenko E., Roumiantseva M. Recombinant form of Sinorhizobium phage AP16 isolated from mountain region of Caucasus
  • Bakaev M., Vladimirova M., Kozlova A., Muntyan V., Afonin A., Grudinin M., Roumiantseva M. Abundant of CRISPR/Cas elements in genomes of nitrogen-fixing bacteria from the genus Sinorhizobium

 

VII Youth School-Conference on Molecular and Cellular Biology of the Institute of Cytology of the Russian Academy of Sciences, October 12-15, 2020, St. Petersburg:

  • Vladimirova M.E., Muntyan V.S., Rumyantseva M.L. Genomic islands of Sinorhizobium meliloti embedded in tRNA-Thr(ggt) [Vladimirova M.E., Muntyan V.S., Roumiantseva M.L. Genomic islands of Sinorhizobium meliloti site-specifically integrated into the tRNA-Thr(ggt)]
  • Kozlova A.P., Muntyan V.S., Dzyubenko E.A., Afonin A.M., Rumyantseva M.L. New recombinant form of rhizophage 16-3 from soils of the Caucasus [Kozlova A.P., Muntyan V.S., Dzyubenko E.A., Afonin A.M., Roumiantseva M.L. New recombinant form of rhizophage 16-3 from soil of Caucasus]
  • Saksaganskaya A.S., Muntyan V.S., Simarov B.V., Rumyantseva M.L. Cryptic plasmids of Sinorhizobium meliloti — natural recombinant replicons [Saksaganskaya A.S., Muntyan V.S., Simarov B.V., Roumiantseva M.L. Cryptic plasmids of Sinorhizobium meliloti are natural recombinant replicons]

 

II International Scientific Conference "Plants and Microorganisms: Biotechnology of the future" (PLAMIC2020), October 5-9, 2020, Saratov:

  • Vladimirova M.E., Muntyan V.S., Saksaganskaya A.S., Simarov B.V., Rumantseva M.L. Popularization of mass sports in Russia Sinorhizobium sp. [Vladimirova M.E., Muntyan V.S., Saksaganskaya A.S., Simarov B.V., Rumyantseva M.L. Phylogenetic analysis of genomic islets in closely related species belonging to Sinorhizobium sp.]
  • V Muntyan.S., A Muntyan.N., Simarov B.V., M Rumyantseva.L. Phylogenetic analysis of vertically horizontally and inherited genes responsible for salt tolerance of nitrogen-fixing alpha-proteobacteria [Muntyan V. S., Muntyan A. N., Simarov B. V., Roumiantseva L. M. Phylogenetic analysis vertically and horizontally acquired genes responsible for salt tolerance in nitrogen-fixing alphaproteobacteria]
  • Karasev E.S., Andronov E.E., Chizhevskaya E.P., Stroev N.A. Sovereign analysis of nucleotide polymorphism of biomosomal and symbiotic genes [Karasev E.P., Andronov E.E., Chizhevskaya E.P., Provorov N.A. Comparative analysis of state and municipal management of the North Caucasus. nucleotide polymorphism of chromosomal and symbiotic genes in symbionts of eastern goat and medical rue from the population of the North Caucasus]
  • Aksenova T.S., Onichuk O.P., Kurchak O.N., Andronov E.E., Provorov N.A. Study of the genetic organization of the Rhizobium leguminosarum bv. trifolii strain, characterized by symbiosis with Trifolium ambiguum clover [Aksenova T.S., Onishchuk O.P., Kurchak O.N., Andronov E.E., Provorov N.A.. Study of the genetic organization of the Rhizobium leguminosarum bv. trifolii strain forming a symbiosis with Trifolium ambiguum clover]
  • Kimeklis A.K., Aksenova T.S., Gladkov G.V., Kuznetseva I.G., Sazanova A.L., Sharonova V.I., Belimov A.A., Onichuk O.P., Kurchak O.N., Pinaev A.G., Andronov E.E., Prov N.A. Rhizobial symbionts of Vavilovia formosa originate from the species Rhizobium leguminosarum bv. viciae, but they do not form a separate group within themselves [Kimeklis A.K., Aksenova T.S., Gladkov G.V., Kuznetsova I.G., Sazanova A.L., Safronova V.I., Belimov A.A., Onishchuk O.P., Kurchak O.N., Pinaev A.G., Andronov E.E., Provorov N.A. Rhizobium Vavilovia formosa symbionts belong to Rhizobium leguminosarum bv. species of viciae, but form a separate group within it]
  • About Onishchuk.P., About Kurchak.N., Andronov E.E., A Kimeklis.K., Aksenova T.S., Dzyubenko N.I., Dzyubenko E.A., Provorov N.A. Phylogenetic diversity of fast-growing nodule bacteria (Rhizobiaceae) Of the North Caucasus region [Onishchuk O. P., Kurchak O. N., Andronov E. E., Kimeklis A. K., Aksenova T. S., Dzyubenko N. I., Dzyubenko E. A., Provorov N. A. phylogenetic diversity of fast-growing nodule bacteria (Rhizobiaceae) North Caucasus Region]
  • Provorov N.A., Kimeklis A.K., Chirak E.R., Onichuk O.P., Kurchak O.N., Andronov E.E. Microsymbionts of plant production as model genetics. A., Kimeklis A.K., Chirak E.R., Onishchuk O.P., Kurchak O.N., Andronov E.E. Microsymbionts of plants as models of evolutionary genetics]

 

BGRS/SB-2020: 12th International Multiconference “Bioinformatics of Genome Regulation and Structure/Systems Biology”, 06-10 July 2020, Novosibirsk, Russia / 12th International Multiconference "Bioinformatics of Genome Regulation and Structure/Systems Biology", July 6-10, 2020, Novosibirsk:

  • Kozlova A.P., Muntyan V.S., Afonin A.M., Antonova E.V., Muntyan A.N., Kabilov M.R., Dzyubenko E.A., Roumiantseva M.L. Comparative genomic analysis of moderate bacteriophages of alfalfa root nodule bacteria
  • Saksaganskaia A.S., Muntyan V.S., Afonin A.M., Roumiantseva M.L. Cryptic plasmids of alfalfa root nodule bacteria – structural and functional diversity

 

VI All-Russian Youth Scientific Forum "OPENSCIENCE 2019", November 13-15, 2019, Gatchina:

  • Kozlova A.P., Cherkasova M.E., Muntyan V.S., Afonin A.M., Rumyantseva M.L. The rhizobiophage of bacteria Sinorhizobium meliloti isolated at the Central Asian alfalfa Diversity Center

 

21st International Congress on Nitrogen Fixation, Oct. 10-15, 2019, Wuhan, China:

  • Roumiantseva M.L., Cherkasova M.E., Muntyan V.S. Phage related sequences abounded in sinorhizobia chromosomes and their evolutionary role
  • Muntyan V.S., Muntyan A.N., Simarov B.V., Roumiantseva M.L. Phylogenetic analysis of vertically and horizontally acquired genes responsible for salt tolerance of nitrogen-fixing alpha-proteobacteria

 

VIII scientific and practical conference with international participation "Genetics - the fundamental basis of innovations in medicine and breeding", September 26-29, 2019, Rostov-on-Don:

  • Cherkasova M.E., Saksaganskaya A.S., Muntyan V.S., Rumyantseva M.L. hsd genes as markers for the search for economically valuable strains of Sinorhizobium meliloti
  • Saksaganskaya A.S., Cherkasova M.E., Muntyan V.S., Rumyantseva M.L. Molecular genetic approaches to the analysis of highly effective strains of Sinorhizobium meliloti

 

2nd Russian Microbiological Congress, September 23-27, 2019, Saransk:

  • Kozlova A.P., Cherkasova M.E., Muntyan V.S., Afonin A.M., Rumyantseva M.L. Bacteriophages of Sinorhizobium meliloti isolated at the Lucerne Diversity Center

 

VII International Scientific and Practical Conference "Biotechnology: science and practice", September 16-20, 2019, Sevastopol:

  • Cherkasova M.E., Muntyan V.S., Saksaganskaya A.S., Simarov B.V., Rumyantseva M.L. Genomic islands of symbiotic nitrogen-fixing bacteria of the genus Sinorhizobium
  • Saksaganskaya A.S., Muntyan V.S., Laktionov Yu.V., Rumyantseva M.L., Simarov B.V. Nucleotide analysis of Nod factor synthesis genes of the Sinorhizobiummeliloti strain AK555 – a highly effective alfalfa symbiont

 

44th FEBS Congress, 6-11 July 2019, Krakow, Poland:

  • Roumiantseva M., Cherkasova M., Muntyan V. Accessory elements of rhizobia chromosome: site-specific integration, structural and functional diversity
  • Muntyan V., Afonin A., Cherkasova M., Muntyan A., Saksaganskaya A., Roumiantseva M. The genome architecture of the strain Ensifer meliloti AK89, a highly effective symbiont of Medicago lupulina
  • Cherkasova M., Muntyan V., Saksaganskaia A., Simarov B., Roumiantseva M. S. medicae genomes screened for genomic islands
  • Saksaganskaia A., Kozlova A., Muntyan V., Cherkasova M., Roumiantseva M. Genome structure of highly effective strain Sinorhizobium meliloti AK555

 

VIII Congress of Young Scientists / Biotechnologies and Low-temperature Systems / Biotechnologies and Living Systems:

  • Prokhorova V.A., Kozlova A.P., Pastukhova N.D. Isolation of rhizobiophages and determination of their lytic activity

 

International Congress "VII Congress of the Vavilov Society of Geneticists and Breeders dedicated to the 100th anniversary of the Department of Genetics of St. Petersburg State University, and associated symposiums", June 18-22, 2019, St. Petersburg:

  • Rumyantseva M.L., Cherkasova M.E., Muntyan V.S. Genomic islands of bacteria: functional significance and structural polymorphism
  • Cherkasova M.E., Muntyan V.S., Rumyantseva M.L., Simarov B.V. Genome of the model strain Sinorhizobium meliloti SHM1-105
  • Saksaganskaya A.S., Muntyan V.S., Laktionov Yu.V., Rumyantseva M.L., Simarov B.V. Genome of a highly effective strain of Sinorhizobium meliloti AK555
  • Chizhevskaya E.P., Onishchuk O.P., Kurchak O.N., Andronov E.E., Simarov B.V. Analysis of the melanin biosynthesis gene in natural strains of alfalfa nodule bacteria of various geographical origin
  • Kurchak O.N., Onishchuk O.P., Chizhevskaya E.P., Simarov B.V. Identification of genes involved in the control of symbiotic efficacy of Sinorhizobium meliloti strains
  • Gladkov G.V., Kimeklis A.K., Onishchuk O.P., Kurchak O.N., Kuznetsova I.G., Sazanova A.L., Safronova V.I., Belimov A.A., Aksenova T.S., Pinaev A.G., Andronov E.E., Provorov N.A. Inactivation of the nodX gene in strains of R. leguminosarum bv. viciae, symbionts of the relict legume Vavilovia formosa
  • Kimeklis A.K., Gladkov G.V., Kuznetsova I.G., Sazanova A.L., Safronova V.I., Belimov A.A., Onishchuk O.P., Kurchak O.N., Aksenova T.S., Pinaev A.G., Andronov E.E., Provorov N.A. Features of symbiotic activity and phenotypic signs of rhizobium Rhizobium leguminosarum bv. viciae of the relict legume Vavilovia formosa
  • Sviridova O.V., Vorobyov N.I., Kurchak O.N., Onishchuk O.P., Pishik V.N., Orlova O.V., Popov A.A. Change of active species of lignin-destroying bacteria in the complex biological preparation barkon during its long-term storage

 

III School-Conference of Young scientists "Molecular genetic and cellular aspects of plant-microbial interactions", June 17, 2019, St. Petersburg:

  • Cherkasova M.E., Muntyan V.S., Rumyantseva M.L., Simarov B.V. Genome of the model strain Sinorhizobium meliloti SHM1-105
  • Saksaganskaya A.S., Muntyan V.S., Laktionov Yu.V., Rumyantseva M.L., Simarov B.V. Genome of a highly effective strain of Sinorhizobium meliloti AK555

 

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